species:   Artha
pid:       MI0000980
parent:    ath-MIR169f
paralog:   
locus:     3:4805684-4805850
matures:   ['UGAGCCAAGGAUGACUUGCCG', 'GCAAGUUGACCUUGGCUCUGC']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 3:4805684-4805850

0 out of bounds
145 alignments
145 proper strand
117 stranded perfect matches

                             ***********************                                                               ***********************                             
GGGUCUUGCAUGAAGGAAUAACGAAUGGAAUUGAGCCAAGGAUGACUUGCCGGUUUAAACCCAACCGGUUUAUGACCAUUGAUUUGGUCUCAUUCACAAUCUGUUGAUUCGUGUCUGGCAAGUUGACCUUGGCUCUGCUUCGUUCUCUAUUCUUCCAUGUUAGAUUC
((((((.(((((.(((((((..(((((((...(((((((((..((((((((((..((((((.....)))))).(((((......))))).....(((((((....)))).))).))))))))))..)))))))))...)))))))..))))))).))))).))))))
-------------------------------UGAGCCAAGGAUGACUUGCCG------------------------------------------------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGC----------------------------- l=21 a=71 c*
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGC----------------------------- l=21 a=71 ma
-------------------------------UGAGCCAAGGAUGACUUGCCG------------------------------------------------------------------------------------------------------------------- l=21 a=0 ma*

-------------------------------------------------------------------------------------------------------------------------GUUGACCUUGGC---------------------------------- l=12 a=1 
----------------------------------------------------------------------------------------------------------------------CAAGUUGgCCUUGGCUCUG------------------------------ l=19 a=1 
----------------------------------------------------------------------------------------------------------------------CAAGUUGACCUUGGCUCUGg----------------------------- l=20 a=1 
----------------------------------------------------------------------------------------------------------------------CAAGUUGACCUUGGCUCUuC----------------------------- l=20 a=1 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUC-------------------------------- l=18 a=1 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCU------------------------------- l=19 a=14 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCc------------------------------- l=19 a=4 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCa------------------------------- l=19 a=1 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGcCCUUGGCUCU------------------------------- l=19 a=1 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUG------------------------------ l=20 a=22 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUa------------------------------ l=20 a=2 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUu------------------------------ l=20 a=2 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGC----------------------------- l=21 a=71 (c*,ma)
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGg----------------------------- l=21 a=1 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGa----------------------------- l=21 a=6 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACuUUGGCUCUGC----------------------------- l=21 a=4 
---------------------------------------------------------------------------------------------------------------------GCAAGcUGACCUUGGCUCUGC----------------------------- l=21 a=1 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGCU---------------------------- l=22 a=3 
---------------------------------------------------------------------------------------------------------------------GCAAGUUGACCUUGGCUCUGCc---------------------------- l=22 a=1 
--------------------------------------------------------------------------------------------------------------------GGCAAGUUGACCUUGGCUCU------------------------------- l=20 a=1 
--------------------------------------------------------------------------------------------------------------------GGCAAGUUGACCUUGGCUCUG------------------------------ l=21 a=2 
-------------------------------------------------------------------------------UGAUUUGGUCUCAcU------------------------------------------------------------------------- l=15 a=1 
-----------------------------------CCAAGGAUGACU------------------------------------------------------------------------------------------------------------------------ l=12 a=1 
-------------------------------UGAGCCAAGGAUGACUUu---------------------------------------------------------------------------------------------------------------------- l=18 a=1 
----------UGAAGGAAUAACGAAUGGAAU---------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111110
fn-111
